graphical user interface (gui) for the matlab implementation of camv Search Results


graphical user interface (gui) for the matlab implementation of camv  (MathWorks Inc)
90
MathWorks Inc graphical user interface (gui) for the matlab implementation of camv
The Graphical User Interface (GUI) for the MATLAB implementation of <t>CAMV.</t> The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Graphical User Interface (Gui) For The Matlab Implementation Of Camv, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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chi2gof function  (MathWorks Inc)
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MathWorks Inc chi2gof function
The Graphical User Interface (GUI) for the MATLAB implementation of <t>CAMV.</t> The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Chi2gof Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/chi2gof function/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
chi2gof function - by Bioz Stars, 2026-03
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neural network toolbox  (MathWorks Inc)
90
MathWorks Inc neural network toolbox
The Graphical User Interface (GUI) for the MATLAB implementation of <t>CAMV.</t> The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Neural Network Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/neural network toolbox/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
neural network toolbox - by Bioz Stars, 2026-03
90/100 stars
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angioquant version 1.33  (MathWorks Inc)
90
MathWorks Inc angioquant version 1.33
The Graphical User Interface (GUI) for the MATLAB implementation of <t>CAMV.</t> The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Angioquant Version 1.33, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/angioquant version 1.33/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
angioquant version 1.33 - by Bioz Stars, 2026-03
90/100 stars
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matlab software  (MathWorks Inc)
90
MathWorks Inc matlab software
The Graphical User Interface (GUI) for the MATLAB implementation of <t>CAMV.</t> The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Matlab Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab software - by Bioz Stars, 2026-03
90/100 stars
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matlab release 2018b  (MathWorks Inc)
90
MathWorks Inc matlab release 2018b
The Graphical User Interface (GUI) for the MATLAB implementation of <t>CAMV.</t> The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.
Matlab Release 2018b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab release 2018b/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab release 2018b - by Bioz Stars, 2026-03
90/100 stars
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Image Search Results


The Graphical User Interface (GUI) for the MATLAB implementation of CAMV. The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.

Journal: Methods (San Diego, Calif.)

Article Title: Computer Aided Manual Validation of Mass Spectrometry-based Proteomic Data

doi: 10.1016/j.ymeth.2013.03.004

Figure Lengend Snippet: The Graphical User Interface (GUI) for the MATLAB implementation of CAMV. The left tree contains a searchable list of protein hits in order of decreasing MASCOT score, each peptide assignment made to that protein, and all possible combinations of PTMs for each scan. The middle panel contains the MS2 scan data with pre-labeled peaks. On the right is a survey of the precursor window of the MS1 scan and a view of any quantitation information associated with the assignment. The peptide ladder at the top summarizes the sequencing information: red for an identified fragment, black for missing. A peak color-coding scheme allows for rapid surveillance of the quality of the match: within tolerance (green), within 1.5x tolerance (magenta), unmatched peak (red), and isotopic peak (yellow). Peptides which are pre-emptively excluded by the software appear in red on the left-hand tree. For these peptides, the reason for preemptive exclusion is displayed at the top left of the MS2 panel in place of the sequence ladder, along with an option to proceed with processing.

Article Snippet: Once an analysis has been user- verified, publication-ready figures and spreadsheets containing the appropriate quantitative data can be generated from accepted assignments. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window caption a7 The Graphical User Interface (GUI) for the MATLAB implementation of CAMV.

Techniques: Labeling, Quantitation Assay, Sequencing, Software

Results of CAMV applied to quantitative tyrosine phosphorylation dataset. (A) All peptide matches following user validation of the dataset. Color code: Agreement between algorithm and user 201/317(green), alternate identification chosen by user 4/317 (yellow), additional assignment included by user 79/317 (blue), and assignment rejected by user 33/317 (red). (B) Distribution of user and CAMV decisions versus MASCOT score. Note that in many cases the user rescued the spectra that were pre-emptively excluded by the software, while in other cases the user rejected the spectral assignment based on the poor quality of the match.

Journal: Methods (San Diego, Calif.)

Article Title: Computer Aided Manual Validation of Mass Spectrometry-based Proteomic Data

doi: 10.1016/j.ymeth.2013.03.004

Figure Lengend Snippet: Results of CAMV applied to quantitative tyrosine phosphorylation dataset. (A) All peptide matches following user validation of the dataset. Color code: Agreement between algorithm and user 201/317(green), alternate identification chosen by user 4/317 (yellow), additional assignment included by user 79/317 (blue), and assignment rejected by user 33/317 (red). (B) Distribution of user and CAMV decisions versus MASCOT score. Note that in many cases the user rescued the spectra that were pre-emptively excluded by the software, while in other cases the user rejected the spectral assignment based on the poor quality of the match.

Article Snippet: Once an analysis has been user- verified, publication-ready figures and spreadsheets containing the appropriate quantitative data can be generated from accepted assignments. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window caption a7 The Graphical User Interface (GUI) for the MATLAB implementation of CAMV.

Techniques: Phospho-proteomics, Biomarker Discovery, Software